1OGW Cell Cycle date May 13, 2003
title Synthetic Ubiquitin With Fluoro-Leu At 50 And 67
authors D.Alexeev, R.Ramage, D.W.Young, L.Sawyer
compound source
Molecule: Ubiquitin
Chain: A
Fragment: Residues 1-76
Other_details: Lef Is (4s)-5-Fluoro-L-Leucine
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.840 42.770 28.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.32 Å
ligand LEF enzyme
related structures by homologous chain: 1YIW, 1YJ1
Primary referenceSynthesis, structural and biological studies of ubiquitin mutants containing (2S, 4S)-5-fluoroleucine residues strategically placed in the hydrophobic core., Alexeev D, Barlow PN, Bury SM, Charrier JD, Cooper A, Hadfield D, Jamieson C, Kelly SM, Layfield R, Mayer RJ, McSparron H, Price NC, Ramage R, Sawyer L, Starkmann BA, Uhrin D, Wilken J, Young DW, Chembiochem 2003 Sep 5;4(9):894-6. PMID:12964166
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1ogw.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 1OGW
  • CSU: Contacts of Structural Units for 1OGW
  • Likely Quarternary Molecular Structure file(s) for 1OGW
  • Structure Factors (138 Kb)
  • Retrieve 1OGW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OGW from S2C, [Save to disk]
  • Re-refined 1ogw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1OGW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OGW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1OGW from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OGW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ogwa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ogw_A] [1ogw]
  • SWISS-PROT database: [P62988]
  • Domain organization of [UBIQ_HUMAN] by SWISSPFAM
  • Domain found in 1OGW: [UBQ ] by SMART
    • Other resources with information on 1OGW
  • Community annotation for 1OGW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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