1OJC	Oxidoreductase	date	Jul 08, 2003
title	Human Monoamine Oxidase B In Complex With N-(2-Aminoethyl)-P-Chlorobenzamide
authors	C.Binda, D.E.Edmondson, A.Mattevi
compound		source
Molecule: Amine Oxidase [Flavin-Containing] B Chain: A, B Synonym: Monoamine Oxidase, Mao-B Ec: 1.4.3.4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Pichia Pastoris Expression_system_taxid: 4922
symmetry	Space Group: C 2 2 2	R_factor 0.193 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 131.690 223.080 86.470 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.4 Å
ligand	FAD, LAZ	enzyme	Oxidoreductase E.C.1.4.3.4 BRENDA
related structures	by homologous chain: 1GOS, 1OJ9
Gene Ontology	Chain Function Process Component A, B primary amine oxidase activi... electron carrier activity oxidoreductase activity protein homodimerization act... flavin adenine dinucleotide ... xenobiotic metabolic process... response to toxic substance response to aluminum ion response to selenium ion negative regulation of serot... response to lipopolysacchari... response to drug small molecule metabolic pro... response to ethanol positive regulation of dopam... response to steroid hormone ... response to corticosterone s... oxidation-reduction process mitochondrion mitochondrial envelope mitochondrial outer membrane... mitochondrial inner membrane... membrane integral to membrane
Primary reference	Insights into the mode of inhibition of human mitochondrial monoamine oxidase B from high-resolution crystal structures., Binda C, Li M, Hubalek F, Restelli N, Edmondson DE, Mattevi A, Proc Natl Acad Sci U S A 2003 Aug 19;100(17):9750-5. Epub 2003 Aug 11. PMID:12913124

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk] Biological Unit Coordinates (1ojc.pdb1.gz) 170 Kb LPC: Ligand-Protein Contacts for 1OJC CSU: Contacts of Structural Units for 1OJC Likely Quarternary Molecular Structure file(s) for 1OJC Structure Factors (389 Kb) Retrieve 1OJC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OJC from S2C, [Save to disk] Re-refined 1ojc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OJC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1OJC

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1OJC, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ojca2, region A:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojca1, region A:3-289,A:402-501 [Jmol] [rasmolscript] [script source]     - Domain d1ojcb2, region B:290-401 [Jmol] [rasmolscript] [script source]     - Domain d1ojcb1, region B:3-289,B:402-496 [Jmol] [rasmolscript] [script source] Fold representative 1ojc from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ojc_A] [1ojc_B] SWISS-PROT database: [P27338] Domain organization of [AOFB_HUMAN] by SWISSPFAM Alignments of the sequence of 1OJC with the sequences similar proteins can be viewed for 1OJC's classification [AOFB_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [AOFB_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1OJC

Community annotation for 1OJC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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