2C5V	Cell Cycle	date	Nov 02, 2005
title	Differential Binding Of Inhibitors To Active And Inactive Cd Provides Insights For Drug Design
authors	G.Kontopidis, C.Mcinnes, S.R.Pandalaneni, I.Mcnae, D.Gibson, M.Me M.Thomas, G.Wood, S.Wang, M.D.Walkinshaw, P.M.Fischer
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A, C Synonym: Cyclin-Dependent Kinase 2, P33 Protein Kinase Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
Molecule: Cyclin A2 Chain: B, D Synonym: Cyclin A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ala-Ala-Aba-Arg-Ser-Leu-Ile-Pff-Nh2 Chain: F, H Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.171 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.501 114.549 156.994 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	ABA, CK4, NH2, PFF BindingDB	enzyme	Transferase E.C.2.7.1.37 BRENDA
note	2C5V supersedes 1OKU
Gene Ontology	Chain Function Process Component A, C
Primary reference	Differential binding of inhibitors to active and inactive CDK2 provides insights for drug design., Kontopidis G, McInnes C, Pandalaneni SR, McNae I, Gibson D, Mezna M, Thomas M, Wood G, Wang S, Walkinshaw MD, Fischer PM, Chem Biol. 2006 Feb;13(2):201-11. PMID:16492568

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk] Biological Unit Coordinates (2c5v.pdb1.gz) 94 Kb Biological Unit Coordinates (2c5v.pdb2.gz) 95 Kb LPC: Ligand-Protein Contacts for 2C5V CSU: Contacts of Structural Units for 2C5V Likely Quarternary Molecular Structure file(s) for 2C5V Structure Factors (411 Kb) Retrieve 2C5V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2C5V from S2C, [Save to disk] Re-refined 2c5v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2C5V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2C5V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2C5V, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2c5v_B] [2c5v] [2c5v_H] [2c5v_C] [2c5v_A] [2c5v_F] [2c5v_D] SWISS-PROT database: [P20248] [P24941] Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM Domains found in 2C5V: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART

Other resources with information on 2C5V

Community annotation for 2C5V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---