1OLL Immune System Receptor date Aug 07, 2003
title Extracellular Region Of The Human Receptor Nkp46
authors M.Ponassi, C.Cantoni, R.Biassoni, R.Conte, A.Spallarossa, A.Pesce A.Moretta, L.Moretta, M.Bolognesi, D.Bordo
compound source
Molecule: Nk Receptor
Chain: A
Fragment: Extracellular Domain, Residues 25-212
Synonym: Isoform Bnkp46 Cell Receptor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pqe30
Expression_system_plasmid: Vr1012-Nkp46
symmetry Space Group: P 61
R_factor 0.195 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.477 85.477 59.909 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.93 Å
ligand EDO enzyme
note 1OLL is a representative structure
related structures by homologous chain: 1P6F
Primary referenceStructure of the human NK cell triggering receptor NKp46 ectodomain., Ponassi M, Cantoni C, Biassoni R, Conte R, Spallarossa A, Pesce A, Moretta A, Moretta L, Bolognesi M, Bordo D, Biochem Biophys Res Commun 2003 Sep 19;309(2):317-23. PMID:12951052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1oll.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 1OLL
  • CSU: Contacts of Structural Units for 1OLL
  • Likely Quarternary Molecular Structure file(s) for 1OLL
  • Structure Factors (137 Kb)
  • Retrieve 1OLL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OLL from S2C, [Save to disk]
  • Re-refined 1oll structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OLL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OLL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OLL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1olla1, region A:1-95 [Jmol] [rasmolscript] [script source]
        - Domain d1olla2, region A:96-188 [Jmol] [rasmolscript] [script source]
  • Fold representative 1oll from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oll_A] [1oll]
  • SWISS-PROT database: [O76036]
  • Domain organization of [NCTR1_HUMAN] by SWISSPFAM
  • Domains found in 1OLL: [IG] [IG_like ] by SMART
  • Other resources with information on 1OLL
  • Community annotation for 1OLL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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