1OMA Toxin date Sep 09, 1993
title Sequential Assignment And Structure Determination Of Spider Omega-Aga-Ivb
authors H.Yu, M.K.Rosen, S.L.Schreiber
compound source
Molecule: Omega-Aga-Ivb
Chain: A
Engineered: Yes
 Organism_scientific: Agelenopsis Aperta
Organism_taxid: 6908
methodSolution NMR
related structures by homologous chain: 1IVA, 1OMB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSequential assignment and structure determination of spider toxin omega-Aga-IVB., Yu H, Rosen MK, Saccomano NA, Phillips D, Volkmann RA, Schreiber SL, Biochemistry 1993 Dec 7;32(48):13123-9. PMID:8241166
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (1oma.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1OMA
  • Retrieve 1OMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OMA from S2C, [Save to disk]
    • View 1OMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OMA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OMA, from MSDmotif at EBI
  • Genome occurence of 1OMA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oma__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oma] [1oma_A]
  • SWISS-PROT database: [P37045]
  • Domain organization of [TOG4B_AGEAP] by SWISSPFAM
    • Other resources with information on 1OMA
  • Community annotation for 1OMA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1OMA from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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