1OMR Metal Binding Protein date Feb 26, 2003
title Non-Myristoylated Wild-Type Bovine Recoverin With Calcium Bo Hand 3
authors O.H.Weiergraber, J.Granzin
compound source
Molecule: Recoverin
Chain: A
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Gene: Rcv1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Recbl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11d
symmetry Space Group: I 4
R_factor 0.249 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.051 84.051 59.179 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CA enzyme
related structures by homologous chain: 1REC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceImpact of N-terminal myristoylation on the Ca2+-dependent conformational transition in recoverin., Weiergraber OH, Senin II, Philippov PP, Granzin J, Koch KW, J Biol Chem 2003 Jun 20;278(25):22972-9. PMID:12686556
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1omr.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (1omr.pdb2.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 1OMR
  • CSU: Contacts of Structural Units for 1OMR
  • Likely Quarternary Molecular Structure file(s) for 1OMR
  • Structure Factors (240 Kb)
  • Retrieve 1OMR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OMR from S2C, [Save to disk]
  • Re-refined 1omr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OMR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OMR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1OMR from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OMR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1omra_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1omr] [1omr_A]
  • SWISS-PROT database: [P21457]
  • Domain organization of [RECO_BOVIN] by SWISSPFAM
  • Domain found in 1OMR: [EFh ] by SMART
  • Other resources with information on 1OMR
  • Community annotation for 1OMR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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