1OPL Transferase date Mar 06, 2003
title Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine K
authors B.Nagar, O.Hantschel, M.A.Young, K.Scheffzek, D.Veach, W.Bornmann B.Clarkson, G.Superti-Furga, J.Kuriyan
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase
Chain: A, B
Fragment: N-Terminal 531 Residues (Myr-Sh3-Sh2-Kinase Domai
Ec: 2.7.1.112
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abl
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: C 2 2 21
R_factor 0.306 R_Free 0.315
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.017 273.384 124.384 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.42 Å
ligand MYR, P16 BindingDB enzyme Transferase E.C.2.7.1.112 BRENDA
note 1OPL (Molecule of the Month:pdb43)
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for the autoinhibition of c-Abl tyrosine kinase., Nagar B, Hantschel O, Young MA, Scheffzek K, Veach D, Bornmann W, Clarkson B, Superti-Furga G, Kuriyan J, Cell 2003 Mar 21;112(6):859-71. PMID:12654251
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (1opl.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (1opl.pdb2.gz) 53 Kb
  • Biological Unit Coordinates (1opl.pdb3.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 1OPL
  • CSU: Contacts of Structural Units for 1OPL
  • Likely Quarternary Molecular Structure file(s) for 1OPL
  • Structure Factors (215 Kb)
  • Retrieve 1OPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OPL from S2C, [Save to disk]
  • Re-refined 1opl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OPL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OPL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1opla2, region A:140-240 [Jmol] [rasmolscript] [script source]
        - Domain d1opla3, region A:241-531 [Jmol] [rasmolscript] [script source]
        - Domain d1opla1, region A:81-139 [Jmol] [rasmolscript] [script source]
        - Domain d1oplb1, region B:140-237 [Jmol] [rasmolscript] [script source]
        - Domain d1oplb2, region B:252-518 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1opl] [1opl_A] [1opl_B]
  • SWISS-PROT database: [P00519]
  • Domain organization of [ABL1_HUMAN] by SWISSPFAM
  • Domains found in 1OPL: [SH2] [SH3] [TyrKc ] by SMART
  • Other resources with information on 1OPL
  • Community annotation for 1OPL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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