1OPO Virus date Mar 06, 2003
title The Structure Of Carnation Mottle Virus
authors E.Morgunova, Z.Dauter, E.Fry, D.Stuart, V.Stel'Mashchuk, A.M.Mikh K.S.Wilson, B.K.Vainshtein
compound source
Molecule: Coat Protein
Chain: A, B, C
Organism_scientific: Carnation Mottle Virus
Organism_taxid: 11986
symmetry Space Group: I 2 3
R_factor 0.183 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
382.600 382.600 382.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand CA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe atomic structure of Carnation Mottle Virus capsid protein., Morgunova EYu, Dauter Z, Fry E, Stuart DI, Stel'mashchuk VYa, Mikhailov AM, Wilson KS, Vainshtein BK, FEBS Lett 1994 Feb 7;338(3):267-71. PMID:8307192
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (1opo.pdb1.gz) 7218 Kb
  • LPC: Ligand-Protein Contacts for 1OPO
  • CSU: Contacts of Structural Units for 1OPO
  • Likely Quarternary Molecular Structure file(s) for 1OPO
  • Retrieve 1OPO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OPO from S2C, [Save to disk]
  • View 1OPO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OPO
  • VIPERdb: visual, structural and computational analysis of 1OPO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OPO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1opoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1opob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1opoc_, region C [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1opo_A] [1opo] [1opo_C] [1opo_B]
  • SWISS-PROT database: [P04383]
  • Domain organization of [COAT_CARMV] by SWISSPFAM
  • Other resources with information on 1OPO
  • Community annotation for 1OPO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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