1OPP Apolipoprotein date May 08, 1997
title Peptide Of Human Apolipoprotein C-I Residues 1-38, Nmr, 28 S
authors A.Rozek, G.W.Buchko, P.Kanda, R.J.Cushley
compound source
Molecule: Apolipoprotein C-I
Chain: A
Fragment: Residues 1 - 38
Synonym: Apo-Ci
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthesized Using Standard Fmoc-Based Solid- Protocols
methodSolution NMR
note 1OPP is a representative structure
related structures by homologous chain: 1IOJ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformational studies of the N-terminal lipid-associating domain of human apolipoprotein C-I by CD and 1H NMR spectroscopy., Rozek A, Buchko GW, Kanda P, Cushley RJ, Protein Sci 1997 Sep;6(9):1858-68. PMID:9300485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (286 Kb) [Save to disk]
  • Biological Unit Coordinates (1opp.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1OPP
  • Original NMR restraints for 1OPP from PDB
  • Retrieve 1OPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OPP from S2C, [Save to disk]
  • View 1OPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OPP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OPP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1opp__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1opp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1opp_A] [1opp]
  • SWISS-PROT database: [P02654]
  • Domain organization of [APOC1_HUMAN] by SWISSPFAM
  • Other resources with information on 1OPP
  • Community annotation for 1OPP at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1OPP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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