1OPT Protein Binding Virus Viral Protein date Mar 06, 2003
title Theoretical Model Of Ccr5 Receptor In Complex With Hiv Gp120 Envelope Glycoprotein And Cd4 Receptor
authors S.Q.Liu, X.F.Shi, Z.R.Sun
compound source
Molecule: C-C Chemokine Receptor Type 5
Chain: A
Synonym: Ccr5
Organism_scientific: Homo Sapiens
Organism_common: Human

Molecule: Exterior Membrane Glycoprotein
Chain: G
Fragment: Core
Synonym: Envelope Glycoprotein Gp120
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus Type 1
Organism_common: Hiv-1

Molecule: T-Cell Surface Glycoprotein Cd4
Chain: C
Fragment: D1d2, N-Terminal Two Domain Fragment

Organism_scientific: Homo Sapiens
Organism_common: Human
methodTheoretical Model
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1OPT
  • SEQRES to COORDINATES correlation for 1OPT from S2C, [Save to disk]
  • View 1OPT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OPT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1opt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [P51681] [P01730] [P04578]
  • Domain organization of [CCR5_HUMAN] [CD4_HUMAN] [ENV_HV1H2] by SWISSPFAM
  • Alignments of the sequence of 1OPT with the sequences similar proteins can be viewed for 1OPT's classification [CCR5_HUMAN] [CD4_HUMAN] [ENV_HV1H2] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CCR5_HUMAN] [CD4_HUMAN] [ENV_HV1H2] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1OPT
  • Community annotation for 1OPT at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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