1OSX Immune System date Mar 20, 2003
title Solution Structure Of The Extracellular Domain Of Blys Receptor 3 (Br3)
authors N.C.Gordon, B.Pan, S.G.Hymowitz, J.P.Yin, R.F.Kelley, A.G.Cochran, M.Yan, V.M.Dixit, W.J.Fairbrother, M.A.Starovasnik
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member 13c;
Chain: A
Fragment: Extracellular Domain
Synonym: B Cell- Activating Factor Receptor, Baff Receptor, Baff-R, Blys Receptor 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf13c Or Baffr Or Br3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR

Primary referenceBAFF/BLyS receptor 3 comprises a minimal TNF receptor-like module that encodes a highly focused ligand-binding site., Gordon NC, Pan B, Hymowitz SG, Yin J, Kelley RF, Cochran AG, Yan M, Dixit VM, Fairbrother WJ, Starovasnik MA, Biochemistry 2003 May 27;42(20):5977-83. PMID:12755599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1OSX
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1OSX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OSX from S2C, [Save to disk]
  • View 1OSX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OSX
  • Cartoon representation from PDB Cartoon
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OSX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1osxa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1osx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1osx_A] [1osx]
  • SWISS-PROT database: [Q96RJ3]
  • Domain organization of [TR13C_HUMAN] by SWISSPFAM
  • Other resources with information on 1OSX
  • Community annotation for 1OSX at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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