1OUF Hydrolase (O-Glycosyl) date Aug 23, 1996
title Contribution Of Hydrophobic Residues To The Stability Of Hum Lysozyme: X-Ray Structure Of The V130a Mutant
authors K.Takano, Y.Yamagata, S.Fujii, K.Yutani
compound source
Molecule: Lysozyme
Chain: A
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Human Lysozyme With Val 130
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Ah22r-
Expression_system_plasmid: Peri8602
Expression_system_gene: Human Lysozyme With Val 130 Replace
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.670 60.920 33.830 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand NA enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1GB8, 2MEI
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceContribution of the hydrophobic effect to the stability of human lysozyme: calorimetric studies and X-ray structural analyses of the nine valine to alanine mutants., Takano K, Yamagata Y, Fujii S, Yutani K, Biochemistry. 1997 Jan 28;36(4):688-98. PMID:9020766
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1ouf.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 1OUF
  • CSU: Contacts of Structural Units for 1OUF
  • Likely Quarternary Molecular Structure file(s) for 1OUF
  • Retrieve 1OUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OUF from S2C, [Save to disk]
  • View 1OUF in 3D
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  • Visual 3D analysis of 1OUF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OUF, from MSDmotif at EBI
  • Genome occurence of 1OUF's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ouf__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ouf_A] [1ouf]
  • SWISS-PROT database: [P61626]
  • Domain organization of [LYSC_HUMAN] by SWISSPFAM
  • Domain found in 1OUF: [LYZ1 ] by SMART
  • Other resources with information on 1OUF
  • Community annotation for 1OUF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1OUF from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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