1OVO Proteinase Inhibitor (Kazal) date Jan 18, 1982
title Crystallographic Refinement Of Japanese Quail Ovomucoid, A K Inhibitor, And Model Building Studies Of Complexes With Ser Proteases
authors E.Weber, E.Papamokos, W.Bode, R.Huber, I.Kato, M.Laskowskijunior
compound source
Molecule: Ovomucoid Third Domain
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Coturnix Japonica
Organism_common: Japanese Quail
Organism_taxid: 93934
symmetry Space Group: P 4 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.000 92.000 64.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
related structures by homologous chain: 1AN1, 1CSO, 1HJA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystallographic refinement of Japanese quail ovomucoid, a Kazal-type inhibitor, and model building studies of complexes with serine proteases., Papamokos E, Weber E, Bode W, Huber R, Empie MW, Kato I, Laskowski M Jr, J Mol Biol 1982 Jul 5;158(3):515-37. PMID:6752426
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1ovo.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (1ovo.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (1ovo.pdb3.gz) 33 Kb
  • CSU: Contacts of Structural Units for 1OVO
  • Likely Quarternary Molecular Structure file(s) for 1OVO
  • Structure Factors (183 Kb)
  • Retrieve 1OVO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OVO from S2C, [Save to disk]
  • Re-refined 1ovo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1OVO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OVO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OVO, from MSDmotif at EBI
  • Genome occurence of 1OVO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ovoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ovob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ovoc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ovod_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ovo_C] [1ovo_A] [1ovo] [1ovo_B] [1ovo_D]
  • SWISS-PROT database: [P01003]
  • Domain organization of [IOVO_COTJA] by SWISSPFAM
  • Domain found in 1OVO: [KAZAL ] by SMART
    • Other resources with information on 1OVO
  • Community annotation for 1OVO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1OVO from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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