1OWT Apoptosis date Mar 30, 2003
title Structure Of The Alzheimer'S Disease Amyloid Precursor Protein Copper Binding Domain
authors K.J.Barnham, W.J.Mckinstry, G.Multhaup, D.Galatis, C.J.Morton, C.C.Curtain, N.A.Williamson, A.R.White, M.G.Hinds, R.S.Norton, K.Beyreuther, C.L.Masters, M.W.Parker, R.Cappai
compound source
Molecule: Amyloid Beta A4 Protein
Chain: A
Fragment: Copper Binding Domain
Synonym: Amyloid Precursor Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: App
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Gs115
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pic9
methodSolution NMR
note 1OWT (Molecule of the Month:pdb79)
Primary referenceStructure of the Alzheimer's disease amyloid precursor protein copper binding domain. A regulator of neuronal copper homeostasis., Barnham KJ, McKinstry WJ, Multhaup G, Galatis D, Morton CJ, Curtain CC, Williamson NA, White AR, Hinds MG, Norton RS, Beyreuther K, Masters CL, Parker MW, Cappai R, J Biol Chem 2003 May 9;278(19):17401-7. Epub 2003 Feb 28. PMID:12611883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (364 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1OWT
  • Retrieve 1OWT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OWT from S2C, [Save to disk]
  • View 1OWT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OWT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OWT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1owta_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1owt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1owt_A] [1owt]
  • SWISS-PROT database: [P05067]
  • Belongs to the amyloid -protein peptide (app) family according to TCDB.
  • Domain organization of [A4_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1OWT with the sequences similar proteins can be viewed for 1OWT's classification [A4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [A4_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1OWT
  • Community annotation for 1OWT at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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