1OX1 Hydrolase date Mar 31, 2003
title Crystal Structure Of The Bovine Trypsin Complex With A Synth Peptide Inhibitor
authors G.Wu, Y.Huang, G.Zhu, Q.Huang, Y.Tang, H.Miyake, M.Kusunoki
compound source
Molecule: Trypsinogen, Cationic
Chain: A
Synonym: Beta-Trypsin
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: 11-Mer Peptide
Chain: B
Synonym: Synthetic Peptide Inhibitor
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized
symmetry Space Group: P 21 21 21
R_factor 0.162 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.700 63.140 69.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1K1N, 1PPE
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1ox1.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1OX1
  • CSU: Contacts of Structural Units for 1OX1
  • Likely Quarternary Molecular Structure file(s) for 1OX1
  • Structure Factors (160 Kb)
  • Retrieve 1OX1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OX1 from S2C, [Save to disk]
  • Re-refined 1ox1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OX1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OX1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OX1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ox1a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ox1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ox1_A] [1ox1_B] [1ox1]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1OX1: [Tryp_SPc ] by SMART
  • Other resources with information on 1OX1
  • Community annotation for 1OX1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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