1OYB Oxidoreductase(Flavoprotein) date Aug 25, 1994
title Old Yellow Enzyme At 2 Angstroms Resolution: Overall Structu Binding And Comparison With Related Flavoproteins
authors K.M.Fox, P.A.Karplus
compound source
Molecule: Old Yellow Enzyme
Chain: A
Ec: 1.6.99.1
Engineered: Yes
 Organism_scientific: Saccharomyces Pastorianus
Organism_taxid: 27292
Gene: Oye1
Expression_system_strain: Pet
Expression_system_vector_type: Pet
Expression_system_plasmid: Pet
symmetry Space Group: P 43 21 2
R_factor 0.173 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.880 142.880 43.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand FMN, HBA enzyme Oxidoreductase E.C.1.6.99.1 BRENDA
related structures by homologous chain: 1OYA, 1OYC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOld yellow enzyme at 2 A resolution: overall structure, ligand binding, and comparison with related flavoproteins., Fox KM, Karplus PA, Structure 1994 Nov 15;2(11):1089-105. PMID:7881908
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1oyb.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 1OYB
  • CSU: Contacts of Structural Units for 1OYB
  • Likely Quarternary Molecular Structure file(s) for 1OYB
  • Retrieve 1OYB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OYB from S2C, [Save to disk]
    • View 1OYB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OYB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OYB, from MSDmotif at EBI
  • Genome occurence of 1OYB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oyb__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oyb] [1oyb_A]
  • SWISS-PROT database: [Q02899]
  • Domain organization of [OYE1_SACPS] by SWISSPFAM
    • Other resources with information on 1OYB
  • Community annotation for 1OYB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science