1OYD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	DEQ	enzyme
note	1OYD (Molecule of the Month:pdb95)
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis of multiple drug-binding capacity of the AcrB multidrug efflux pump., Yu EW, McDermott G, Zgurskaya HI, Nikaido H, Koshland DE Jr, Science 2003 May 9;300(5621):976-80. PMID:12738864

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk] Biological Unit Coordinates (1oyd.pdb1.gz) 454 Kb LPC: Ligand-Protein Contacts for 1OYD CSU: Contacts of Structural Units for 1OYD Likely Quarternary Molecular Structure file(s) for 1OYD Structure Factors (306 Kb) Retrieve 1OYD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OYD from S2C, [Save to disk] Re-refined 1oyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OYD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1oyd] [1oyd_A] SWISS-PROT database: [P31224] Belongs to the resistance-nodulation-cell division (rnd) superfamily according to TCDB.

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