1OZ1 Transferase date Apr 07, 2003
title P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inh
authors B.Lovejoy, A.Villasenor, M.Browner, P.Dunten
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38alpha, Map Kin P38alpha, Cytokine Suppressive Anti-Inflammatory Drug Bindi Protein, Csaid Binding Protein, Csbp, Max-Interacting Prote Kinase Mxi2, Sapk2a;
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14 Or Csbp1 Or Csbp2 Or Csbp Or Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15[Prep4]
Expression_system_vector_type: Plasmid
Expression_system_vector: Pqe9
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.405 85.454 125.841 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FPH enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1OVE, 1P38
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and synthesis of 4-azaindoles as inhibitors of p38 MAP kinase., Trejo A, Arzeno H, Browner M, Chanda S, Cheng S, Comer DD, Dalrymple SA, Dunten P, Lafargue J, Lovejoy B, Freire-Moar J, Lim J, Mcintosh J, Miller J, Papp E, Reuter D, Roberts R, Sanpablo F, Saunders J, Song K, Villasenor A, Warren SD, Welch M, Weller P, Whiteley PE, Zeng L, Goldstein DM, J Med Chem 2003 Oct 23;46(22):4702-13. PMID:14561090
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1oz1.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 1OZ1
  • CSU: Contacts of Structural Units for 1OZ1
  • Likely Quarternary Molecular Structure file(s) for 1OZ1
  • Retrieve 1OZ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OZ1 from S2C, [Save to disk]
  • View 1OZ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OZ1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OZ1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oz1a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oz1] [1oz1_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 1OZ1: [S_TKc ] by SMART
  • Other resources with information on 1OZ1
  • Community annotation for 1OZ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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