1OZI The alternatively spliced PDZ2 domain of PTP-BL date
authors Walma, T., Aelen, J., Oostendorp, M., Berk, L.van.den., Hendriks, W., Vuister, G.W.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 30 Modelsresolution
related structures by homologous chain: 1Q7X, 3PDZ
Primary referenceA Closed Binding Pocket and Global Destabilization Modify the Binding Properties of an Alternatively Spliced Form of the Second PDZ Domain of PTP-BL., Walma T, Aelen J, Nabuurs SB, Oostendorp M, van den Berk L, Hendriks W, Vuister GW, Structure (Camb) 2004 Jan;12(1):11-20. PMID:14725761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (747 Kb) [Save to disk]
  • Biological Unit Coordinates (1ozi.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1OZI
  • Original NMR restraints for 1OZI from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1OZI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OZI from S2C, [Save to disk]
    • View 1OZI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OZI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OZI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ozia_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ozi] [1ozi_A]
  • SWISS-PROT database: [Q64512]
  • Domain organization of [PTN13_MOUSE] by SWISSPFAM
  • Domain found in 1OZI: [PDZ ] by SMART
    • Other resources with information on 1OZI
  • Community annotation for 1OZI at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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