1OZI Hydrolase date Apr 09, 2003
title The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
authors T.Walma, J.Aelen, M.Oostendorp, L.Van Den Berk, W.Hendriks, G.W.Vuister
compound source
Molecule: Protein Tyrosine Phosphatase
Chain: A
Fragment: Pdz2 Of Ptp-Bl
Synonym: Nonreceptor-Type, 13, Protein-Tyrosine Phosphatase Rip, Phosphoprotein Phosphatase, Protein- Tyrosine-Phosphatase, Phosphotyrosine Phosphatase, Ptpase, Ptp36, Bas-Like;
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Other_details: Longer Alternative Splice Variant
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Ptp-Bl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Escherichia Coli Bl21 Codon Plus (De3) Ril Competent;
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
related structures by homologous chain: 1Q7X, 3PDZ
Primary referenceA Closed Binding Pocket and Global Destabilization Modify the Binding Properties of an Alternatively Spliced Form of the Second PDZ Domain of PTP-BL., Walma T, Aelen J, Nabuurs SB, Oostendorp M, van den Berk L, Hendriks W, Vuister GW, Structure (Camb) 2004 Jan;12(1):11-20. PMID:14725761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (749 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1OZI
  • Original NMR restraints for 1OZI from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1OZI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OZI from S2C, [Save to disk]
  • View 1OZI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OZI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OZI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ozia_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ozi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ozi] [1ozi_A]
  • SWISS-PROT database: [Q64512]
  • Domain organization of [PTN13_MOUSE] by SWISSPFAM
  • Domain found in 1OZI: [PDZ ] by SMART
  • Other resources with information on 1OZI
  • Community annotation for 1OZI at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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