1OZT Oxidoreductase date Apr 09, 2003
title Crystal Structure Of Apo-H46r Familial Als Mutant Human Cu,Z Superoxide Dismutase (Cuznsod) To 2.5a Resolution
authors J.S.Elam, A.B.Taylor, R.Strange, S.Antonyuk, P.A.Doucette, J.A.Ro S.S.Hasnain, L.J.Hayward, J.S.Valentine, T.O.Yeates, P.J.Hart
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: M, N, G, H, K, L, I, J
Ec: 1.15.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sod1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvl1392
symmetry Space Group: P 1 21 1
R_factor 0.222 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.617 69.998 113.787 90.00 110.37 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1FUN, 1SOS
Gene
Ontology
ChainFunctionProcessComponent
H, J, M, N, K, I, G, L
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

  • Primary referenceAmyloid-like filaments and water-filled nanotubes formed by SOD1 mutant proteins linked to familial ALS., Elam JS, Taylor AB, Strange R, Antonyuk S, Doucette PA, Rodriguez JA, Hasnain SS, Hayward LJ, Valentine JS, Yeates TO, Hart PJ, Nat Struct Biol 2003 Jun;10(6):461-7. PMID:12754496
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (1ozt.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (1ozt.pdb2.gz) 38 Kb
  • Biological Unit Coordinates (1ozt.pdb3.gz) 38 Kb
  • Biological Unit Coordinates (1ozt.pdb4.gz) 39 Kb
  • CSU: Contacts of Structural Units for 1OZT
  • Likely Quarternary Molecular Structure file(s) for 1OZT
  • Structure Factors (464 Kb)
  • Retrieve 1OZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OZT from S2C, [Save to disk]
  • Re-refined 1ozt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OZT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OZT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oztg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1ozth_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1ozti_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1oztj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1oztk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1oztl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1oztm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1oztn_, region N [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ozt_H] [1ozt_I] [1ozt_K] [1ozt_L] [1ozt] [1ozt_J] [1ozt_M] [1ozt_G] [1ozt_N]
  • SWISS-PROT database: [P00441]
  • Domain organization of [SODC_HUMAN] by SWISSPFAM
  • Other resources with information on 1OZT
  • Community annotation for 1OZT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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