1P0P	Hydrolase	date	Apr 10, 2003
title	Crystal Structure Of Soman-Aged Human Butyryl Cholinesterase Complex With The Substrate Analog Butyrylthiocholine
authors	Y.Nicolet, O.Lockridge, P.Masson, J.C.Fontecilla-Camps, F.Nachon
compound		source
Molecule: Cholinesterase Chain: A Synonym: Acylcholine Acylhydrolase, Choline Esterase II, Butyrylcholine Esterase, Pseudocholinesterase; Ec: 3.1.1.8 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bche Or Che1 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Ovary Cells
symmetry	Space Group: I 4 2 2	R_factor 0.199 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 154.924 154.924 127.909 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	BCH, CL, FUC, GOL, NAG, SO4, VXA	enzyme	Hydrolase E.C.3.1.1.8 BRENDA
related structures	by homologous chain: 1P0M, 1XLV
Gene Ontology	Chain Function Process Component A beta-amyloid binding catalytic activity acetylcholinesterase activit... carboxylesterase activity cholinesterase activity hydrolase activity enzyme binding synaptic transmission, choli... choline metabolic process cellular protein metabolic p... cocaine metabolic process extracellular region extracellular space nuclear envelope lumen endoplasmic reticulum endoplasmic reticulum lumen
Primary reference	Crystal structure of human butyrylcholinesterase and of its complexes with substrate and products., Nicolet Y, Lockridge O, Masson P, Fontecilla-Camps JC, Nachon F, J Biol Chem 2003 Oct 17;278(42):41141-7. Epub 2003 Jul 17. PMID:12869558

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (1p0p.pdb1.gz) 96 Kb Biological Unit Coordinates (1p0p.pdb2.gz) 748 Kb LPC: Ligand-Protein Contacts for 1P0P CSU: Contacts of Structural Units for 1P0P Likely Quarternary Molecular Structure file(s) for 1P0P Structure Factors (272 Kb) Retrieve 1P0P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P0P from S2C, [Save to disk] Re-refined 1p0p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1P0P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1P0P

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1P0P, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p0pa_, region A [Jmol] [rasmolscript] [script source] Fold representative 1p0p from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p0p_A] SWISS-PROT database: [P06276] Domain organization of [CHLE_HUMAN] by SWISSPFAM Alignments of the sequence of 1P0P with the sequences similar proteins can be viewed for 1P0P's classification [CHLE_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CHLE_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1P0P

Community annotation for 1P0P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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