1P0R Protein Binding date Apr 10, 2003
title Solution Structure Of Ubl5 A Human Ubiquitin-Like Protein
authors T.Mcnally, Q.Huang, R.S.Janis, Z.Liu, E.T.Olejniczak, R.M.Reilly
compound source
Molecule: Ubiquitin-Like 5
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
related structures by homologous chain: 1M94, 1UH6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of UBL5, a novel ubiquitin-like modifier., McNally T, Huang Q, Janis RS, Liu Z, Olejniczak ET, Reilly RM, Protein Sci 2003 Jul;12(7):1562-6. PMID:12824502
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1p0r.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1P0R
  • Retrieve 1P0R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P0R from S2C, [Save to disk]
  • View 1P0R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P0R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P0R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p0ra_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p0r] [1p0r_A]
  • SWISS-PROT database: [Q9BZL1]
  • Domain organization of [UBL5_HUMAN] by SWISSPFAM
  • Other resources with information on 1P0R
  • Community annotation for 1P0R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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