1P27	Rna Binding Protein	date	Apr 14, 2003
title	Crystal Structure Of The Human Y14magoh Complex
authors	C.K.Lau, M.D.Diem, G.Dreyfuss, G.D.Van Duyne
compound		source
Molecule: Mago Nashi Protein Homolog Chain: A, C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Magoh Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector: Plasmid Expression_system_plasmid: Pet28a
Molecule: Rna-Binding Protein 8a Chain: B, D Synonym: Rna Binding Motif Protein 8a, Ribonucleoprotein Rb Binding Protein Y14, Binder Of Ovca1- 1, Bov-1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rbm8a Or Rbm8 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector: Plasmid Expression_system_plasmid: Pet21a
symmetry	Space Group: P 1 21 1	R_factor 0.220 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.150 108.455 50.942 90.00 90.24 90.00
method	X-Ray Diffraction	resolution	2.00 Å
related structures	by homologous chain: 1HL6, 1RK8
Gene Ontology	Chain Function Process Component A, C catalytic step 2 spliceosome... D, B
Primary reference	Structure of the Y14-Magoh core of the exon junction complex., Lau CK, Diem MD, Dreyfuss G, Van Duyne GD, Curr Biol 2003 May 27;13(11):933-41. PMID:12781131

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (1p27.pdb1.gz) 79 Kb Biological Unit Coordinates (1p27.pdb2.gz) 40 Kb Biological Unit Coordinates (1p27.pdb3.gz) 40 Kb CSU: Contacts of Structural Units for 1P27 Likely Quarternary Molecular Structure file(s) for 1P27 Structure Factors (429 Kb) Retrieve 1P27 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P27 from S2C, [Save to disk] Re-refined 1p27 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1P27 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P27

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P27, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p27a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1p27b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1p27c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1p27d_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p27_A] [1p27] [1p27_D] [1p27_B] [1p27_C] SWISS-PROT database: [P61326] [Q9Y5S9] Belongs to the nuclear mrna exporter (mrna-e) family according to TCDB. Domain organization of [MGN_HUMAN] [RBM8A_HUMAN] by SWISSPFAM Domain found in 1P27: [RRM ] by SMART

Other resources with information on 1P27

Community annotation for 1P27 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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