1P2Z Viral Protein date Apr 16, 2003
title Refinement Of Adenovirus Type 2 Hexon With Cns
authors J.J.Rux, P.R.Kuser, R.M.Burnett
compound source
Molecule: Hexon Protein
Chain: A
Synonym: Late Protein 2
 Organism_scientific: Human Adenovirus 2
Organism_taxid: 10515
symmetry Space Group: P 21 3
R_factor 0.178 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.540 150.540 150.540 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CIT enzyme
note 1P2Z supersedes 1DHX
related structures by homologous chain: 1P30
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and phylogenetic analysis of adenovirus hexons by use of high-resolution x-ray crystallographic, molecular modeling, and sequence-based methods., Rux JJ, Kuser PR, Burnett RM, J Virol 2003 Sep;77(17):9553-66. PMID:12915569
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (1p2z.pdb1.gz) 434 Kb
  • LPC: Ligand-Protein Contacts for 1P2Z
  • CSU: Contacts of Structural Units for 1P2Z
  • Likely Quarternary Molecular Structure file(s) for 1P2Z
  • Structure Factors (379 Kb)
  • Retrieve 1P2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P2Z from S2C, [Save to disk]
  • Re-refined 1p2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1P2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1P2Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P2Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p2za1, region A:5-650 [Jmol] [rasmolscript] [script source]
        - Domain d1p2za2, region A:651-962 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p2z] [1p2z_A]
  • SWISS-PROT database: [P03277]
  • Domain organization of [HEX_ADE02] by SWISSPFAM
    • Other resources with information on 1P2Z
  • Community annotation for 1P2Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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