1P4O Hormone Growth Factor date Apr 23, 2003
title Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Re
authors S.Munshi, M.Kornienko, D.L.Hall, P.L.Darke, L.Waxman, L.C.Kuo
compound source
Molecule: Insulin-Like Growth Factor I Receptor Protein
Chain: A, B
Fragment: Kinase Domain
Synonym: Cd221 Antigen, Igf1r
Ec: 2.7.1.112
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Igf1r
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.950 85.560 78.880 90.00 99.10 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1IR3
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of apo, unactivated insulin-like growth factor-1 receptor kinase at 1.5 A resolution., Munshi S, Hall DL, Kornienko M, Darke PL, Kuo LC, Acta Crystallogr D Biol Crystallogr 2003 Oct;59(Pt 10):1725-30. Epub 2003, Sep 19. PMID:14501110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (1p4o.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (1p4o.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (1p4o.pdb3.gz) 113 Kb
  • CSU: Contacts of Structural Units for 1P4O
  • Likely Quarternary Molecular Structure file(s) for 1P4O
  • Structure Factors (1030 Kb)
  • Retrieve 1P4O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P4O from S2C, [Save to disk]
  • Re-refined 1p4o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1P4O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P4O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1P4O 1P4OA 1P4OB from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P4O, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p4oa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1p4ob_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1p4o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p4o_A] [1p4o] [1p4o_B]
  • SWISS-PROT database: [P08069]
  • Domain organization of [IGF1R_HUMAN] by SWISSPFAM
  • Domain found in 1P4O: [TyrKc ] by SMART
  • Other resources with information on 1P4O
  • Community annotation for 1P4O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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