1P63 Hormone Growth Factor date Apr 28, 2003
title Human Acidic Fibroblast Growth Factor. 140 Amino Acid Form W Terminal His Tag And Leu111 Replaced With Ile (L111i)
authors S.R.Brych, J.Kim, T.M.Logan, M.Blaber
compound source
Molecule: Acidic Fibroblast Growth Factor
Chain: A, B
Fragment: 140 Amino Acid Form With Amino Terminal His Tag
Synonym: Heparin-Binding Growth Factor 1; Hbgf-1; Afgf; Bet Endothelial Cell Growth Factor; Ecgf-Beta;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a(+)
symmetry Space Group: C 2 2 21
R_factor 0.219 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.410 96.720 107.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand FMT, SO4 enzyme
related structures by homologous chain: 1JQZ, 1RG8
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAccommodation of a highly symmetric core within a symmetric protein superfold., Brych SR, Kim J, Logan TM, Blaber M, Protein Sci 2003 Dec;12(12):2704-18. PMID:14627732
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1p63.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (1p63.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 1P63
  • CSU: Contacts of Structural Units for 1P63
  • Likely Quarternary Molecular Structure file(s) for 1P63
  • Retrieve 1P63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P63 from S2C, [Save to disk]
  • View 1P63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P63
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P63, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p63a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1p63b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p63_A] [1p63] [1p63_B]
  • SWISS-PROT database: [P05230]
  • Domain organization of [FGF1_HUMAN] by SWISSPFAM
  • Domain found in 1P63: [FGF ] by SMART
  • Other resources with information on 1P63
  • Community annotation for 1P63 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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