1P69 Viral Protein Receptor date Apr 29, 2003
title Structural Basis For Variation In Adenovirus Affinity For Th Receptor Car (P417s Mutant)
authors J.Howitt, M.C.Bewley, V.Graziano, J.M.Flanagan, P.Freimuth
compound source
Molecule: Fiber Protein
Chain: A
Synonym: Spike, Protein Iv
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Adenovirus A Serotype 12
Organism_common: Hadv-12
Organism_taxid: 28282
Gene: L5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Coxsackievirus And Adenovirus Receptor
Chain: B
Synonym: Hcar, Cvb3-Binding Protein, Coxsackievirus B-Adeno Receptor, Hcvadr;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cxadr, Car
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 43 3 2
R_factor 0.215 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.620 168.620 168.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for variation in adenovirus affinity for the cellular coxsackievirus and adenovirus receptor., Howitt J, Bewley MC, Graziano V, Flanagan JM, Freimuth P, J Biol Chem 2003 Jul 11;278(28):26208-15. Epub 2003 Apr 25. PMID:12716886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1p69.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 1P69
  • Likely Quarternary Molecular Structure file(s) for 1P69
  • Retrieve 1P69 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P69 from S2C, [Save to disk]
  • View 1P69 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P69
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P69, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p69a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1p69b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p69_A] [1p69_B] [1p69]
  • SWISS-PROT database: [P78310] [P36711]
  • Domain organization of [CXAR_HUMAN] [FIBP_ADE12] by SWISSPFAM
  • Domain found in 1P69: [IG ] by SMART
  • Other resources with information on 1P69
  • Community annotation for 1P69 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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