1P6A	Viral Protein Receptor	date	Apr 29, 2003
title	Structural Basis For Variation In Adenovirus Affinity For Th Receptor Car (S489y Mutant)
authors	J.Howitt, M.C.Bewley, V.Graziano, J.M.Flanagan, P.Freimuth
compound		source
Molecule: Fiber Protein Chain: A Fragment: Knob Domain (Unp Residues 403-587) Synonym: Spike, Protein Iv Engineered: Yes Mutation: Yes		Organism_scientific: Human Adenovirus A Serotype 12 Organism_common: Hadv-12 Organism_taxid: 28282 Gene: L5 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Coxsackievirus And Adenovirus Receptor Chain: B Synonym: Hcar, Cvb3-Binding Protein, Coxsackievirus B-Adeno Receptor, Hcvadr; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cxadr, Car Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 43 3 2	R_factor 0.218 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 168.926 168.926 168.926 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
related structures	by homologous chain: 1KAC, 1NOB, 1RSF
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for variation in adenovirus affinity for the cellular coxsackievirus and adenovirus receptor., Howitt J, Bewley MC, Graziano V, Flanagan JM, Freimuth P, J Biol Chem 2003 Jul 11;278(28):26208-15. Epub 2003 Apr 25. PMID:12716886

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (1p6a.pdb1.gz) 49 Kb CSU: Contacts of Structural Units for 1P6A Likely Quarternary Molecular Structure file(s) for 1P6A Retrieve 1P6A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P6A from S2C, [Save to disk]

View 1P6A in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P6A

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P6A, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p6aa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1p6ab_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p6a_A] [1p6a_B] [1p6a] SWISS-PROT database: [P78310] [P36711] Domain organization of [CXAR_HUMAN] [FIBP_ADE12] by SWISSPFAM Domain found in 1P6A: [IG ] by SMART

Other resources with information on 1P6A

Community annotation for 1P6A at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---