1P97	Transcription	date	May 09, 2003
title	Nmr Structure Of The C-Terminal Pas Domain Of Hif2a
authors	P.J.Erbel, P.B.Card, O.Karakuzu, R.K.Bruick, K.H.Gardner
compound		source
Molecule: Endothelial Pas Domain Protein 1 Chain: A Fragment: C-Terminal Pas Domain Synonym: Epas-1, Member Of Pas Protein 2, Mop2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Epas1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgb1-Parallel
method	Solution NMR
Primary reference	Structural basis for PAS domain heterodimerization in the basic helix--loop--helix-PAS transcription factor hypoxia-inducible factor., Erbel PJ, Card PB, Karakuzu O, Bruick RK, Gardner KH, Proc Natl Acad Sci U S A 2003 Dec 23;100(26):15504-9. Epub 2003 Dec 10. PMID:14668441

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (676 Kb) [Save to disk] Biological Unit Coordinates (1p97.pdb1.gz) 33 Kb CSU: Contacts of Structural Units for 1P97 Retrieve 1P97 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P97 from S2C, [Save to disk]

View 1P97 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P97

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P97, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p97a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p97] [1p97_A] SWISS-PROT database: [Q99814] Domain organization of [EPAS1_HUMAN] by SWISSPFAM Domains found in 1P97: [PAC] [PAS ] by SMART

Other resources with information on 1P97

Community annotation for 1P97 at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

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