1P97 Transcription date May 09, 2003
title Nmr Structure Of The C-Terminal Pas Domain Of Hif2a
authors P.J.Erbel, P.B.Card, O.Karakuzu, R.K.Bruick, K.H.Gardner
compound source
Molecule: Endothelial Pas Domain Protein 1
Chain: A
Fragment: C-Terminal Pas Domain
Synonym: Epas-1, Member Of Pas Protein 2, Mop2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epas1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgb1-Parallel
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for PAS domain heterodimerization in the basic helix--loop--helix-PAS transcription factor hypoxia-inducible factor., Erbel PJ, Card PB, Karakuzu O, Bruick RK, Gardner KH, Proc Natl Acad Sci U S A 2003 Dec 23;100(26):15504-9. Epub 2003 Dec 10. PMID:14668441
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (678 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1P97
  • Retrieve 1P97 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P97 from S2C, [Save to disk]
  • View 1P97 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P97
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P97, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p97a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1p97 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p97] [1p97_A]
  • SWISS-PROT database: [Q99814]
  • Domain organization of [EPAS1_HUMAN] by SWISSPFAM
  • Domains found in 1P97: [PAC] [PAS ] by SMART
  • Other resources with information on 1P97
  • Community annotation for 1P97 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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