1PBV Exchange Factor date Jan 15, 1998
title Sec7 Domain Of The Exchange Factor Arno
authors J.Cherfils, J.Menetrey, M.Mathieu, G.Le Bras, S.Robineau, S.Berau B.Antonny, P.Chardin
compound source
Molecule: Arno
Chain: A
Fragment: Sec7 Domain, Residues 50 - 252
Synonym: Arf Nucleotide-Binding Site Opener
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 3
R_factor 0.182 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.766 89.766 89.766 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1BC9, 1R8Q
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the Sec7 domain of the Arf exchange factor ARNO., Cherfils J, Menetrey J, Mathieu M, Le Bras G, Robineau S, Beraud-Dufour S, Antonny B, Chardin P, Nature 1998 Mar 5;392(6671):101-5. PMID:9510256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1pbv.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 1PBV
  • Likely Quarternary Molecular Structure file(s) for 1PBV
  • Structure Factors (122 Kb)
  • Retrieve 1PBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PBV from S2C, [Save to disk]
  • Re-refined 1pbv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PBV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PBV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pbv__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pbv_A] [1pbv]
  • SWISS-PROT database: [Q99418]
  • Domain organization of [CYH2_HUMAN] by SWISSPFAM
  • Domain found in 1PBV: [Sec7 ] by SMART
    • Other resources with information on 1PBV
  • Community annotation for 1PBV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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