1PD3 Influenza A NEP M1-binding domain date
authors Baudin, F.
compound source
R_Free 0.244
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
A, B

Primary referenceCrystal structure of the M1 protein-binding domain of the influenza A virus nuclear export protein (NEP/NS2)., Akarsu H, Burmeister WP, Petosa C, Petit I, Muller CW, Ruigrok RW, Baudin F, EMBO J 2003 Sep 15;22(18):4646-55. PMID:12970177
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1pd3.pdb1.gz) 10 Kb
  • Biological Unit Coordinates (1pd3.pdb2.gz) 10 Kb
  • Biological Unit Coordinates (1pd3.pdb3.gz) 19 Kb
  • Biological Unit Coordinates (1pd3.pdb4.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1PD3
  • Likely Quarternary Molecular Structure file(s) for 1PD3
  • Structure Factors (52 Kb)
  • Retrieve 1PD3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PD3 from S2C, [Save to disk]
  • Re-refined 1pd3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PD3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PD3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PD3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pd3a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pd3b_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pd3_A] [1pd3_B] [1pd3]
  • SWISS-PROT database: [P03508]
  • Domain organization of [NEP_I34A1] by SWISSPFAM
  • Other resources with information on 1PD3
  • Community annotation for 1PD3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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