1PD6 Structural Protein date May 19, 2003
title The Nmr Structure Of Domain C2 Of Human Cardiac Myosin Binding Protein C
authors A.Ababou, M.Gautel, M.Pfuhl
compound source
Molecule: Myosin-Binding Protein C, Cardiac-Type, Domain C2;
Chain: A
Fragment: Domain C2
Synonym: Cardiac Myosin-Binding Protein C; Cardiac Mybp-C Protein C, Cardiac;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Heart
Tissue: Muscle
Gene: Mybpc3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-8a
methodSolution NMR
Primary referenceDissecting the N-terminal myosin binding site of human cardiac myosin-binding protein C. Structure and myosin binding of domain C2., Ababou A, Gautel M, Pfuhl M, J Biol Chem. 2007 Mar 23;282(12):9204-15. Epub 2006 Dec 27. PMID:17192269
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (773 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1PD6
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1PD6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PD6 from S2C, [Save to disk]
  • View 1PD6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PD6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PD6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pd6a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1pd6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pd6] [1pd6_A]
  • SWISS-PROT database: [Q14896]
  • Domain organization of [MYPC3_HUMAN] by SWISSPFAM
  • Domain found in 1PD6: [IG ] by SMART
  • Alignments of the sequence of 1PD6 with the sequences similar proteins can be viewed for 1PD6's classification [MYPC3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MYPC3_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1PD6
  • Community annotation for 1PD6 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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