1PF8 Transferase date May 24, 2003
title Crystal Structure Of Human Cyclin-Dependent Kinase 2 Complex Nucleoside Inhibitor
authors D.J.Moshinsky, R.C.Bellamacina, D.C.Boisvert, P.Huang, T.Hui, J.J S.H.Kim, A.G.Rice
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.753 72.306 71.944 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.51 Å
ligand SU9 BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1H25, 1PXM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSU9516: biochemical analysis of cdk inhibition and crystal structure in complex with cdk2., Moshinsky DJ, Bellamacina CR, Boisvert DC, Huang P, Hui T, Jancarik J, Kim SH, Rice AG, Biochem Biophys Res Commun 2003 Oct 24;310(3):1026-31. PMID:14550307
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1pf8.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 1PF8
  • CSU: Contacts of Structural Units for 1PF8
  • Likely Quarternary Molecular Structure file(s) for 1PF8
  • Structure Factors (74 Kb)
  • Retrieve 1PF8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PF8 from S2C, [Save to disk]
  • Re-refined 1pf8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PF8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PF8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PF8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pf8a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1pf8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pf8_A] [1pf8]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1PF8: [S_TKc ] by SMART
  • Other resources with information on 1PF8
  • Community annotation for 1PF8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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