1PF9	Chaperone	date	May 24, 2003
title	Groel-Groes-Adp
authors	C.Chaudhry, G.W.Farr, M.J.Todd, H.S.Rye, A.T.Brunger, P.D.Adams, A.L.Horwich, P.B.Sigler
compound		source
Molecule: Groel Protein Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N Synonym: Protein Cpn60, 60 Kda Chaperonin Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Grol Or Groel Or Mopa Or B4143 Or C5227 Or Z5748 Or E Sf4297; Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh 5 Alpha Expression_system_vector_type: Plasmid Expression_system_plasmid: Iq-Trc
Molecule: Groes Protein Chain: O, P, Q, R, S, T, U Synonym: Protein Cpn10, 10 Kda Chaperonin Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Gros Or Groes Or Mopb Or B4142 Or C5226 Or Z5747 Or E Sf4296; Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh 5 Alpha Expression_system_vector_type: Plasmid Expression_system_plasmid: Iq-Trc
symmetry	Space Group: P 21 21 2	R_factor 0.269 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 255.260 265.250 184.400 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.99 Å
ligand	ADP, MG	enzyme
related structures	by homologous chain: 1AON, 1MNF, 1PCQ
Gene Ontology	Chain Function Process Component F, N, K, E, M, C, L, A, J, B, H, D, I, G S, T, Q, O, P, R, U
Primary reference	Role of the gamma-phosphate of ATP in triggering protein folding by GroEL-GroES: function, structure and energetics., Chaudhry C, Farr GW, Todd MJ, Rye HS, Brunger AT, Adams PD, Horwich AL, Sigler PB, EMBO J 2003 Oct 1;22(19):4877-87. PMID:14517228

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1125 Kb) [Save to disk] Biological Unit Coordinates (1pf9.pdb1.gz) 1110 Kb LPC: Ligand-Protein Contacts for 1PF9 CSU: Contacts of Structural Units for 1PF9 Likely Quarternary Molecular Structure file(s) for 1PF9 Structure Factors (1971 Kb) Retrieve 1PF9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PF9 from S2C, [Save to disk] Re-refined 1pf9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PF9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PF9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PF9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pf9a3, region A:137-190,A:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9a2, region A:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9a1, region A:2-136,A:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9b3, region B:137-190,B:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9b2, region B:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9b1, region B:2-136,B:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9c3, region C:137-190,C:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9c2, region C:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9c1, region C:2-136,C:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9d3, region D:137-190,D:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9d2, region D:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9d1, region D:2-136,D:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9e3, region E:137-190,E:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9e2, region E:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9e1, region E:2-136,E:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9f3, region F:137-190,F:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9f2, region F:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9f1, region F:2-136,F:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9g3, region G:137-190,G:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9g2, region G:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9g1, region G:2-136,G:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9h3, region H:137-190,H:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9h2, region H:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9h1, region H:2-136,H:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9i3, region I:137-190,I:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9i2, region I:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9i1, region I:2-136,I:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9j3, region J:137-190,J:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9j2, region J:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9j1, region J:2-136,J:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9k3, region K:137-190,K:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9k2, region K:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9k1, region K:2-136,K:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9l3, region L:137-190,L:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9l2, region L:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9l1, region L:2-136,L:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9m3, region M:137-190,M:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9m2, region M:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9m1, region M:2-136,M:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9n3, region N:137-190,N:367-409 [Jmol] [rasmolscript] [script source]     - Domain d1pf9n2, region N:191-366 [Jmol] [rasmolscript] [script source]     - Domain d1pf9n1, region N:2-136,N:410-525 [Jmol] [rasmolscript] [script source]     - Domain d1pf9o_, region O [Jmol] [rasmolscript] [script source]     - Domain d1pf9p_, region P [Jmol] [rasmolscript] [script source]     - Domain d1pf9q_, region Q [Jmol] [rasmolscript] [script source]     - Domain d1pf9r_, region R [Jmol] [rasmolscript] [script source]     - Domain d1pf9s_, region S [Jmol] [rasmolscript] [script source]     - Domain d1pf9t_, region T [Jmol] [rasmolscript] [script source]     - Domain d1pf9u_, region U [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pf9_L] [1pf9_M] [1pf9_J] [1pf9_N] [1pf9_T] [1pf9_A] [1pf9_D] [1pf9_O] [1pf9_F] [1pf9_U] [1pf9_B] [1pf9_E] [1pf9_I] [1pf9] [1pf9_S] [1pf9_P] [1pf9_G] [1pf9_R] [1pf9_C] [1pf9_K] [1pf9_H] [1pf9_Q] SWISS-PROT database: [P0A6F9] [P0A6F5] Domain organization of [CH10_ECOLI] [CH60_ECOLI] by SWISSPFAM Domain found in 1PF9: [Cpn10 ] by SMART

Other resources with information on 1PF9

Community annotation for 1PF9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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