1PFT Transcription Initiation date Mar 27, 1996
title N-Terminal Domain Of Tfiib, Nmr
authors W.Zhu, Q.Zeng, C.M.Colangelo, L.M.Lewis, M.F.Summers, R.A.Scott
compound source
Molecule: Tfiib
Chain: A
Fragment: N-Terminal Domain
Synonym: Pftfiibn
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Gene: Pyrococcus Furiosus Tfiib Gene
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pqzntd
Expression_system_gene: Pyrococcus Furiosus Tfiib Gene
methodSolution NMR
ligand ZN enzyme
note 1PFT is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe N-terminal domain of TFIIB from Pyrococcus furiosus forms a zinc ribbon., Zhu W, Zeng Q, Colangelo CM, Lewis M, Summers MF, Scott RA, Nat Struct Biol 1996 Feb;3(2):122-4. PMID:8564536
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (322 Kb) [Save to disk]
  • Biological Unit Coordinates (1pft.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1PFT
  • CSU: Contacts of Structural Units for 1PFT
  • Original NMR restraints for 1PFT from PDB
  • Retrieve 1PFT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PFT from S2C, [Save to disk]
  • View 1PFT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PFT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PFT, from MSDmotif at EBI
  • Genome occurence of 1PFT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pft__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pft] [1pft_A]
  • SWISS-PROT database: [P61998]
  • Domain organization of [TF2B_PYRFU] by SWISSPFAM
  • Other resources with information on 1PFT
  • Community annotation for 1PFT at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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