1PG6 Structural Genomics, Unknown Function date May 27, 2003
title X-Ray Crystal Structure Of Protein Spym3_0169 From Streptoco Pyogenes. Northeast Structural Genomics Consortium Target D
authors A.Kuzin, I.Lee, W.Edstrom, R.Xiao, T.Acton, B.Rost, G.Montelione, J L.Tong, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Hypothetical Protein Spym3_0169
Chain: A
Synonym: Hypothetical Protein Spym18_0222
Engineered: Yes
Other_details: All Methionines Modified To Semet
Organism_scientific: Streptococcus Pyogenes
Organism_taxid: 186103
Strain: Mgas8232
Gene: Sps0176
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: H 3 2
R_factor 0.213 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.541 71.541 216.927 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand CA, MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1pg6.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (1pg6.pdb2.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 1PG6
  • CSU: Contacts of Structural Units for 1PG6
  • Likely Quarternary Molecular Structure file(s) for 1PG6
  • Structure Factors (624 Kb)
  • Retrieve 1PG6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PG6 from S2C, [Save to disk]
  • Re-refined 1pg6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PG6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PG6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PG6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pg6a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pg6_A] [1pg6]
  • SWISS-PROT database: [Q8P2Q3]
  • Domain organization of [Q8P2Q3_STRP3] by SWISSPFAM
  • Other resources with information on 1PG6
  • Community annotation for 1PG6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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