1PGG Oxidoreductase date Dec 02, 1995
title Prostaglandin H2 Synthase-1 Complexed With 1-(4-Iodobenzoyl) Methoxy-2-Methylindole-3-Acetic Acid (Iodoindomethacin), Tr
authors P.J.Loll, D.Picot, R.M.Garavito
compound source
Molecule: Prostaglandin H2 Synthase-1
Chain: A, B
Synonym: Cyclooxygenase I
Ec: 1.14.99.1
 Organism_scientific: Ovis Aries
Organism_common: Sheep
Organism_taxid: 9940
Organelle: Seminal Vesicle
symmetry Space Group: I 2 2 2
R_factor 0.254 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.220 208.990 232.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.50 Å
ligand HEM, IMM, NAG BindingDB enzyme Oxidoreductase E.C.1.14.99.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity


    • Primary referenceSynthesis and use of iodinated nonsteroidal antiinflammatory drug analogs as crystallographic probes of the prostaglandin H2 synthase cyclooxygenase active site., Loll PJ, Picot D, Ekabo O, Garavito RM, Biochemistry 1996 Jun 11;35(23):7330-40. PMID:8652509
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (1pgg.pdb1.gz) 183 Kb
  • LPC: Ligand-Protein Contacts for 1PGG
  • CSU: Contacts of Structural Units for 1PGG
  • Likely Quarternary Molecular Structure file(s) for 1PGG
  • Retrieve 1PGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PGG from S2C, [Save to disk]
    • View 1PGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PGG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PGG, from MSDmotif at EBI
  • Genome occurence of 1PGG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pgga2, region A:33-73 [Jmol] [rasmolscript] [script source]
        - Domain d1pgga1, region A:74-583 [Jmol] [rasmolscript] [script source]
        - Domain d1pggb2, region B:33-73 [Jmol] [rasmolscript] [script source]
        - Domain d1pggb1, region B:74-583 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pgg] [1pgg_B] [1pgg_A]
  • SWISS-PROT database: [P05979]
  • Domain organization of [PGH1_SHEEP] by SWISSPFAM
  • Domain found in 1PGG: [EGF ] by SMART
    • Other resources with information on 1PGG
  • Community annotation for 1PGG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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