1PGR	Cytokine	date	Mar 08, 1999
title	2:2 Complex Of G-Csf With Its Receptor
authors	M.Aritomi, N.Kunishima, T.Okamoto, R.Kuroki, Y.Ota, K.Morikawa
compound		source
Molecule: Protein (Granulocyte Colony-Stimulating Factor) Chain: A, C, E, G Synonym: G-Csf Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cellular_location: Extracellular Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
Molecule: Protein (G-Csf Receptor) Chain: B, D, F, H Fragment: Crh Region (Bn Domain:H1-108, Bc Domain:H109-215) Synonym: G-Csf-R Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Cellular_location: Cellular Membrane Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf-9 Expression_system_cellular_location: Nucleus Expression_system_vector_type: Virus Expression_system_vector: Autographa Californica Nuclear Polyhedrosis Virus
symmetry	Space Group: P 43 21 2	R_factor 0.317 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 125.725 125.725 373.305 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.50 Å
Gene Ontology	Chain Function Process Component A, C, G, E
Primary reference	Atomic structure of the GCSF-receptor complex showing a new cytokine-receptor recognition scheme., Aritomi M, Kunishima N, Okamoto T, Kuroki R, Ota Y, Morikawa K, Nature 1999 Oct 14;401(6754):713-7. PMID:10537111

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk] Biological Unit Coordinates (1pgr.pdb1.gz) 115 Kb Biological Unit Coordinates (1pgr.pdb2.gz) 116 Kb CSU: Contacts of Structural Units for 1PGR Likely Quarternary Molecular Structure file(s) for 1PGR Structure Factors (229 Kb) Retrieve 1PGR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PGR from S2C, [Save to disk] Re-refined 1pgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PGR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PGR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PGR, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pgra_, region A [Jmol] [rasmolscript] [script source]     - Domain d1pgrb1, region B:1-106 [Jmol] [rasmolscript] [script source]     - Domain d1pgrb2, region B:108-213 [Jmol] [rasmolscript] [script source]     - Domain d1pgrc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1pgrd2, region D:108-213 [Jmol] [rasmolscript] [script source]     - Domain d1pgrd1, region D:3-106 [Jmol] [rasmolscript] [script source]     - Domain d1pgre_, region E [Jmol] [rasmolscript] [script source]     - Domain d1pgrf1, region F:1-106 [Jmol] [rasmolscript] [script source]     - Domain d1pgrf2, region F:108-213 [Jmol] [rasmolscript] [script source]     - Domain d1pgrg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1pgrh2, region H:108-213 [Jmol] [rasmolscript] [script source]     - Domain d1pgrh1, region H:3-106 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pgr_E] [1pgr_G] [1pgr_B] [1pgr] [1pgr_C] [1pgr_A] [1pgr_F] [1pgr_D] [1pgr_H] SWISS-PROT database: [P40223] [P09919] Domain organization of [CSF3R_MOUSE] [CSF3_HUMAN] by SWISSPFAM Domain found in 1PGR: [IL6 ] by SMART

Other resources with information on 1PGR

Community annotation for 1PGR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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