1PGT	Transferase	date	Feb 17, 1997
title	Crystal Structure Of Human Glutathione S-Transferase P1-1[V1 Complexed With S-Hexylglutathione
authors	X.Ji
compound		source
Molecule: Glutathione S-Transferase Chain: A, B Synonym: Gst, Hgstp1-1[V104] Ec: 2.5.1.18 Engineered: Yes Mutation: Yes Other_details: Hgstp1-1[V104] And Hgstp1-1[I104] Are Natura Occurring Variants Of Hgstp1-1 Obtained By Site-Directed Mu		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: 293 Organ: Placenta Cellular_location: Cytoplasm Gene: Gtp_human Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Plyss Expression_system_plasmid: Bl21
symmetry	Space Group: C 1 2 1	R_factor 0.182 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.390 90.800 69.150 90.00 98.08 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	EPE, GTX BindingDB	enzyme	Transferase E.C.2.5.1.18 BRENDA
related structures	by homologous chain: 1GLQ
Gene	GTP (H. sapiens)
Gene Ontology	Chain Function Process Component A, B glutathione peroxidase activ... protein binding
Primary reference	Structure and function of the xenobiotic substrate-binding site and location of a potential non-substrate-binding site in a class pi glutathione S-transferase., Ji X, Tordova M, O'Donnell R, Parsons JF, Hayden JB, Gilliland GL, Zimniak P, Biochemistry 1997 Aug 12;36(32):9690-702. PMID:9245401

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (1pgt.pdb1.gz) 73 Kb LPC: Ligand-Protein Contacts for 1PGT CSU: Contacts of Structural Units for 1PGT Likely Quarternary Molecular Structure file(s) for 1PGT Structure Factors (286 Kb) Retrieve 1PGT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PGT from S2C, [Save to disk] Re-refined 1pgt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PGT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PGT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PGT, from MSDmotif at EBI Genome occurence of 1PGT's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pgta2, region A:0-76 [Jmol] [rasmolscript] [script source]     - Domain d1pgta1, region A:77-209 [Jmol] [rasmolscript] [script source]     - Domain d1pgtb2, region B:1-76 [Jmol] [rasmolscript] [script source]     - Domain d1pgtb1, region B:77-209 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pgt_A] [1pgt] [1pgt_B] SWISS-PROT database: [P09211] Domain organization of [GSTP1_HUMAN] by SWISSPFAM

Other resources with information on 1PGT

Community annotation for 1PGT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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