1PI3 Lyase date May 29, 2003
title E28q Mutant Benzoylformate Decarboxylase From Pseudomonas Pu
authors A.K.Bera, M.S.Hasson
compound source
Molecule: Benzoylformate Decarboxylase
Chain: A
Synonym: Bfd, Bfdc
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Gene: Mdlc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rf4738
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prep7
symmetry Space Group: I 2 2 2
length a length b length c angle alpha angle beta angle gamma
80.960 95.528 137.061 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand CA, MG, TZD enzyme Lyase E.C. BRENDA
related structures by homologous chain: 1BFD, 1PO7

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (1pi3.pdb1.gz) 350 Kb
  • LPC: Ligand-Protein Contacts for 1PI3
  • CSU: Contacts of Structural Units for 1PI3
  • Likely Quarternary Molecular Structure file(s) for 1PI3
  • Structure Factors (2536 Kb)
  • Retrieve 1PI3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PI3 from S2C, [Save to disk]
  • Re-refined 1pi3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PI3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PI3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1PI3 from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PI3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pi3a1, region A:182-341 [Jmol] [rasmolscript] [script source]
        - Domain d1pi3a2, region A:2-181 [Jmol] [rasmolscript] [script source]
        - Domain d1pi3a3, region A:342-524 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pi3_A] [1pi3]
  • SWISS-PROT database: [P20906]
  • Domain organization of [MDLC_PSEPU] by SWISSPFAM
  • Other resources with information on 1PI3
  • Community annotation for 1PI3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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