1PIB Dna date May 30, 2003
title Solution Structure Of Dna Containing Cpd Opposited By Ga
authors J.H.Lee, C.J.Park, J.S.Shin, B.S.Choi
compound source
Molecule: 5'-D(Cpgpcpaptptpapcpgpc)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: 5'-D(Gpcpgptpgpaptpgpcpg)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
Primary referenceNMR structure of the DNA decamer duplex containing double T*G mismatches of cis-syn cyclobutane pyrimidine dimer: implications for DNA damage recognition by the XPC-hHR23B complex., Lee JH, Park CJ, Shin JS, Ikegami T, Akutsu H, Choi BS, Nucleic Acids Res 2004 Apr 30;32(8):2474-81. Print 2004. PMID:15121904
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (1pib.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1PIB
  • Original NMR restraints for 1PIB from PDB
  • Retrieve 1PIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PIB from S2C, [Save to disk]
    • View 1PIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PIB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PIB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pib_A] [1pib] [1pib_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1PIB
  • Community annotation for 1PIB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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