1PIR Carboxylic Ester Hydrolase date Dec 22, 1994
title Solution Structure Of Porcine Pancreatic Phospholipase A2
authors B.D.Van Den Berg, M.Tessari, G.H.De Haas, H.M.Verheij, R.Boelens R.Kaptein
compound source
Molecule: Phospholipase A2
Chain: A
Ec: 3.1.1.4
Engineered: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Organ: Pancreas
methodSolution NMR
ligand CA enzyme Hydrolase E.C.3.1.1.4 BRENDA
related structures by homologous chain: 1BVM, 1PIS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of porcine pancreatic phospholipase A2., van den Berg B, Tessari M, de Haas GH, Verheij HM, Boelens R, Kaptein R, EMBO J 1995 Sep 1;14(17):4123-31. PMID:7556053
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1pir.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 1PIR
  • CSU: Contacts of Structural Units for 1PIR
  • Retrieve 1PIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PIR from S2C, [Save to disk]
  • View 1PIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PIR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PIR, from MSDmotif at EBI
  • Genome occurence of 1PIR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pir__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pir_A] [1pir]
  • SWISS-PROT database: [P00592]
  • Domain organization of [PA21B_PIG] by SWISSPFAM
  • Domain found in 1PIR: [PA2c ] by SMART
  • Other resources with information on 1PIR
  • Community annotation for 1PIR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1PIR from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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