1PKP Ribosomal Protein date Aug 30, 1993
title The Structure Of Ribosomal Protein S5 Reveals Sites Of Inter With 16s Rrna
authors V.Ramakrishnan, S.W.White
compound source
Molecule: Ribosomal Protein S5
Chain: A
Engineered: Yes
Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Gene: Bacillus Stearothermophilus
Expression_system_gene: Bacillus Stearothermophilus
symmetry Space Group: P 32 2 1
R_factor 0.220 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
59.300 59.300 109.800 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å

Primary referenceThe structure of ribosomal protein S5 reveals sites of interaction with 16S rRNA., Ramakrishnan V, White SW, Nature 1992 Aug 27;358(6389):768-71. PMID:1508272
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1pkp.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 1PKP
  • Likely Quarternary Molecular Structure file(s) for 1PKP
  • Retrieve 1PKP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PKP from S2C, [Save to disk]
  • View 1PKP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PKP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PKP, from MSDmotif at EBI
  • Genome occurence of 1PKP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pkp_2, region 4-77 [Jmol] [rasmolscript] [script source]
        - Domain d1pkp_1, region 78-148 [Jmol] [rasmolscript] [script source]
  • Fold representative 1pkp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pkp_A] [1pkp]
  • SWISS-PROT database: [P02357]
  • Domain organization of [RS5_BACST] by SWISSPFAM
  • Other resources with information on 1PKP
  • Community annotation for 1PKP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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