1PL8	Oxidoreductase	date	Jun 07, 2003
title	Human Sdhnad+ Complex
authors	T.A.Pauly, J.L.Ekstrom, D.A.Beebe, B.Chrunyk, D.Cunningham, M.Gri A.Kamath, S.E.Lee, R.Madura, D.Mcguire, T.Subashi, D.Wasilko, P.W B.L.Mylari, P.J.Oates, P.D.Adams, V.L.Rath
compound		source
Molecule: Human Sorbitol Dehydrogenase Chain: A, B, C, D Synonym: L-Iditol 2-Dehydrogenase Ec: 1.1.1.14 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_vector: Pet23a
symmetry	Space Group: P 62	R_factor 0.195 R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma 133.776 133.776 224.708 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	NAD, ZN	enzyme	Oxidoreductase E.C.1.1.1.14 BRENDA
related structures	by homologous chain: 1PL6
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	X-ray crystallographic and kinetic studies of human sorbitol dehydrogenase., Pauly TA, Ekstrom JL, Beebe DA, Chrunyk B, Cunningham D, Griffor M, Kamath A, Lee SE, Madura R, Mcguire D, Subashi T, Wasilko D, Watts P, Mylari BL, Oates PJ, Adams PD, Rath VL, Structure (Camb) 2003 Sep;11(9):1071-85. PMID:12962626

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk] Biological Unit Coordinates (1pl8.pdb1.gz) 245 Kb Biological Unit Coordinates (1pl8.pdb2.gz) 124 Kb Biological Unit Coordinates (1pl8.pdb3.gz) 243 Kb LPC: Ligand-Protein Contacts for 1PL8 CSU: Contacts of Structural Units for 1PL8 Likely Quarternary Molecular Structure file(s) for 1PL8 Retrieve 1PL8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PL8 from S2C, [Save to disk]

View 1PL8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PL8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PL8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pl8a1, region A:1-145,A:317-356 [Jmol] [rasmolscript] [script source]     - Domain d1pl8a2, region A:146-316 [Jmol] [rasmolscript] [script source]     - Domain d1pl8b1, region B:1-145,B:317-356 [Jmol] [rasmolscript] [script source]     - Domain d1pl8b2, region B:146-316 [Jmol] [rasmolscript] [script source]     - Domain d1pl8c1, region C:1-145,C:317-356 [Jmol] [rasmolscript] [script source]     - Domain d1pl8c2, region C:146-316 [Jmol] [rasmolscript] [script source]     - Domain d1pl8d1, region D:1-145,D:317-356 [Jmol] [rasmolscript] [script source]     - Domain d1pl8d2, region D:146-316 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pl8_A] [1pl8_C] [1pl8_B] [1pl8] [1pl8_D] SWISS-PROT database: [Q00796] Domain organization of [DHSO_HUMAN] by SWISSPFAM

Other resources with information on 1PL8

Community annotation for 1PL8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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