1PLO Cytokine Receptor date Jun 08, 2003
title Transforming Growth Factor-Beta Type II Receptor Extracellular Domain
authors S.Deep, K.P.Walker Iii, Z.Shu, A.P.Hinck
compound source
Molecule: Tgf-Beta Receptor Type II
Chain: A
Synonym: Tgfr-2, Tgf-Beta Type II Receptor
Ec: 2.7.1.37
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfbr2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1KS6, 1KTZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and backbone dynamics of the TGFbeta type II receptor extracellular domain., Deep S, Walker KP 3rd, Shu Z, Hinck AP, Biochemistry 2003 Sep 2;42(34):10126-39. PMID:12939140
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (314 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1PLO
  • Original NMR restraints for 1PLO from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1PLO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PLO from S2C, [Save to disk]
  • View 1PLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PLO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PLO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ploa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1plo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1plo_A] [1plo]
  • SWISS-PROT database: [P37173]
  • Domain organization of [TGFR2_HUMAN] by SWISSPFAM
  • Other resources with information on 1PLO
  • Community annotation for 1PLO at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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