1PLR Dna-Binding date Jan 02, 1995
title Crystal Structure Of The Eukaryotic Dna Polymerase Processiv Pcna
authors T.S.R.Krishna, X.P.Kong, S.Gary, P.M.Burgers, J.Kuriyan
compound source
Molecule: Proliferating Cell Nuclear Antigen (Pcna)
Chain: A
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 21 3
R_factor 0.218 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.700 121.700 121.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
related structures by homologous chain: 1SXJ
Gene
Ontology
ChainFunctionProcessComponent
A
  • chromatin silencing at telom...

    • Primary referenceCrystal structure of the eukaryotic DNA polymerase processivity factor PCNA., Krishna TS, Kong XP, Gary S, Burgers PM, Kuriyan J, Cell 1994 Dec 30;79(7):1233-43. PMID:8001157
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1plr.pdb1.gz) 124 Kb
  • CSU: Contacts of Structural Units for 1PLR
  • Likely Quarternary Molecular Structure file(s) for 1PLR
  • Structure Factors (85 Kb)
  • Retrieve 1PLR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PLR from S2C, [Save to disk]
  • Re-refined 1plr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PLR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PLR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PLR, from MSDmotif at EBI
  • Genome occurence of 1PLR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1plr_1, region 1-126 [Jmol] [rasmolscript] [script source]
        - Domain d1plr_2, region 127-258 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1plr_A] [1plr]
  • SWISS-PROT database: [P15873]
  • Domain organization of [PCNA_YEAST] by SWISSPFAM
    • Other resources with information on 1PLR
  • Community annotation for 1PLR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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