OCA Atlas for 1PMA

1PMA

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

note

1PMA (Molecule of the Month:pdb166)

Gene
Ontology

Chain	Function	Process	Component
J, L, D, M, F, E, O, G, A, H, I, C, N, K
S, T, V, X, R, Q, Y, 1, 2, W, P, B, U, Z

Primary reference

Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolution., Lowe J, Stock D, Jap B, Zwickl P, Baumeister W, Huber R, Science 1995 Apr 28;268(5210):533-9. PMID:7725097

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1096 Kb) [Save to disk]

Biological Unit Coordinates (1pma.pdb1.gz) 1090 Kb

CSU: Contacts of Structural Units for 1PMA

Likely Quarternary Molecular Structure file(s) for 1PMA

Structure Factors (921 Kb)

Retrieve 1PMA in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1PMA from S2C, [Save to disk]

Re-refined 1pma structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PMA in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pma] [1pma_1] [1pma_2] [1pma_A] [1pma_B] [1pma_C] [1pma_D] [1pma_E] [1pma_F] [1pma_G] [1pma_H] [1pma_I] [1pma_J] [1pma_K] [1pma_L] [1pma_M] [1pma_N] [1pma_O] [1pma_P] [1pma_Q] [1pma_R] [1pma_S] [1pma_T] [1pma_U] [1pma_V] [1pma_W] [1pma_X] [1pma_Y] [1pma_Z]

SWISS-PROT database: [P25156] [P28061]

Domain found in 1PMA: [Proteasome_A_N ] by SMART

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