1PN5 Apoptosis date Jun 12, 2003
title Nmr Structure Of The Nalp1 Pyrin Domain (Pyd)
authors S.Hiller, A.Kohl, F.Fiorito, T.Herrmann, G.Wider, J.Tschopp, M.G.Grutter, K.Wuthrich
compound source
Molecule: Nacht-, Lrr- And Pyd-Containing Protein 2
Chain: A
Fragment: Pyrin Domain (Pyd)
Synonym: Death Effector Filament-Forming Ced-4-Like Apoptosis Protein, Nucleotide-Binding Domain And Caspase Recruitment Domain, Caspase Recruitment Domain Protein 7;
Engineered: Yes
Other_details: Residues 1-56 Correspond To The Fused Immunoglobulin G Binding Protein G (Sws P06654, Residues 228-282)
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nalp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet20b+
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of the apoptosis- and inflammation-related NALP1 pyrin domain., Hiller S, Kohl A, Fiorito F, Herrmann T, Wider G, Tschopp J, Grutter MG, Wuthrich K, Structure (Camb) 2003 Oct;11(10):1199-205. PMID:14527388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (476 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1PN5
  • Original NMR restraints for 1PN5 from PDB
  • Retrieve 1PN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PN5 from S2C, [Save to disk]
  • View 1PN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PN5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PN5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pn5a1, region A:59-151 [Jmol] [rasmolscript] [script source]
  • Fold representative 1pn5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pn5_A] [1pn5]
  • SWISS-PROT database: [Q9C000] [P06654]
  • Domain organization of [NALP1_HUMAN] [SPG1_STRSG] by SWISSPFAM
  • Domain found in 1PN5: [PYRIN ] by SMART
  • Other resources with information on 1PN5
  • Community annotation for 1PN5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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