1PP0 Toxin date Jun 16, 2003
title Volvatoxin A2 In Monoclinic Crystal
authors S.C.Lin, Y.C.Lo, J.Y.Lin, Y.C.Liaw
compound source
Molecule: Volvatoxin A2
Chain: A, B, C, D
Organism_scientific: Volvariella Volvacea
Organism_taxid: 36659
symmetry Space Group: C 1 2 1
R_factor 0.229 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
153.983 57.478 114.629 90.00 119.39 90.00
method X-Ray Diffractionresolution 1.42 Å
ligand ACY enzyme
note 1PP0 is a representative structure
related structures by homologous chain: 1VGF
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structures and electron micrographs of fungal volvatoxin A2., Lin SC, Lo YC, Lin JY, Liaw YC, J Mol Biol 2004 Oct 15;343(2):477-91. PMID:15451675
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (1pp0.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (1pp0.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (1pp0.pdb3.gz) 36 Kb
  • Biological Unit Coordinates (1pp0.pdb4.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1PP0
  • CSU: Contacts of Structural Units for 1PP0
  • Likely Quarternary Molecular Structure file(s) for 1PP0
  • Structure Factors (1655 Kb)
  • Retrieve 1PP0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PP0 from S2C, [Save to disk]
  • Re-refined 1pp0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PP0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PP0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1PP0 1PP0A 1PP0B 1PP0C 1PP0D from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PP0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pp0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pp0b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1pp0c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1pp0d_, region D [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pp0_C] [1pp0_B] [1pp0] [1pp0_D] [1pp0_A]
  • SWISS-PROT database: [Q6USC4]
  • Belongs to the cytolytic delta endotoxin (cyt1/2) family according to TCDB.
  • Domain organization of [Q6USC4_9AGAR] by SWISSPFAM
  • Other resources with information on 1PP0
  • Community annotation for 1PP0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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