1PPH Hydrolase Hydrolase Inhibitor date Oct 24, 1991
title Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of M P-Amidino-And P-Guanidino Phenylalanine To Thrombin And Try Ray Crystal Structures Of Their Trypsin Complexes And Model Their Thrombin Complexes
authors W.Bode, D.Turk
compound source
Molecule: Trypsin
Chain: E
Engineered: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Tissue: Pancreas
symmetry Space Group: P 21 21 21
R_factor 0.167 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
63.510 69.190 63.810 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 0ZG, CA, SO4 enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1K1P, 1TNL

Primary referenceGeometry of binding of the N alpha-tosylated piperidides of m-amidino-, p-amidino- and p-guanidino phenylalanine to thrombin and trypsin. X-ray crystal structures of their trypsin complexes and modeling of their thrombin complexes., Turk D, Sturzebecher J, Bode W, FEBS Lett 1991 Aug 5;287(1-2):133-8. PMID:1879520
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1pph.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1PPH
  • CSU: Contacts of Structural Units for 1PPH
  • Likely Quarternary Molecular Structure file(s) for 1PPH
  • Retrieve 1PPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PPH from S2C, [Save to disk]
  • View 1PPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PPH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PPH, from MSDmotif at EBI
  • Genome occurence of 1PPH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pphe_, region E [Jmol] [rasmolscript] [script source]
  • Fold representative 1pph from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pph_E] [1pph]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1PPH: [Tryp_SPc ] by SMART
  • Other resources with information on 1PPH
  • Community annotation for 1PPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science